U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX14202826: GSM5903124: Hediste diversicolor proboscis replicate 1 [HdPR1]; Hediste diversicolor; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 21M spots, 6.4G bases, 1.8Gb downloads

External Id: GSM5903124_r1
Submitted by: SeaTox Lab @UCIBIO - Applied Molecular Biosciences Unit, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa
Study: Comparative transcriptomics between two potentially toxin-secreting marine annelids: Glycera alba and Hediste diversicolor
show Abstracthide Abstract
Transcriptome profiling of whole proboscis and body wall of the marine Polychaeta Glycera alba, adults, wild population (sex undiscriminated), collected from the muddy-sandy intertidal flats at W Portugal (2020). Transcriptome profiling of glandular and muscular regions of proboscis of the marine Polychaeta Hediste diversicolor, adults, wild population (sex undiscriminated), collected from the muddy-sandy intertidal flats at W Portugal (2019). Overall design: Three samples (independent replicates) were analysed (either organ for both species). Total RNA from all samples of Glycera alba (GaPR1, GaPR2, GaPR3, GaBW1, GaBW2, GaBW3) was used to build the main library. Total RNA from Replicate 2 of Hediste diversicolor (HdG2 and HdPR2) was used to build the main library.
Sample: Hediste diversicolor proboscis replicate 1 [HdPR1]
SAMN25995683 • SRS12023235 • All experiments • All runs
Library:
Name: GSM5903124
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated from whole-tissue preserved in RNAlater using the RNeasy Mini Kit (Qiagen) combined with on-column DNA digestion with the RNase-Free DNase set (Qiagen). Library preparation was done using Stranded mRNA Library Preparation Kit and the generated RNA fragments were sequenced in an Illumina Novaseq platform, using 150bp paired-end sequencing reads: 100M for samples HdG2 and HdPR2, 40M for the remaining.
Runs: 1 run, 21M spots, 6.4G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR1805056521,028,2706.4G1.8Gb2023-11-29

ID:
20066244

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...